The only Rietveld program that can help you is XND which will allow you to
declare different temperatures for the different histograms and include the
temperature dependence in the structural model.
See for example:
R.Seshadri, C.Martin, M.Hervieu, B.Raveau and C.N.R.Rao,
Structural evolution and electronic properties of La1+xSr2-xMn2O7,
Chem. Mater. 9 (1997) 270.
XND can be found at http://rx-crg1.polycnrs-gre.fr/public/xnd/xnd.html
but it cannot help you if the neutron data is TOF.
You worry about thermal parameters being different: The lattice parameters
should be vastly different between 4K and RT (unless you have a ZTE material).
Cheers
Ram
-- Dr. Ram SESHADRIAnorganische Chemie, Johannes Gutenberg UniversitatBecherWeg 24, Mainz D55099 Germany. Phone(FAX): +49 6131 39 4417(5380)email/net: seshadri@Indigotrem1.chemie.uni-mainz.de