[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[sdpd] Re: Restraints and so on



<x-html>



<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd";>
<html>
<head>
</head>







<body style="background-color: #fff;">
<span style="display:none">&nbsp;</span>

<!--~-|**|PrettyHtmlStartT|**|-~-->
<div id="ygrp-mlmsg" style="position:relative;">
  <div id="ygrp-msg" style="z-index: 1;">
<!--~-|**|PrettyHtmlEndT|**|-~-->

    <div id="ygrp-text" >
      
      
      <p>&gt;we can solve structures much more complex than those we can refine &gt;without restraints.<br>
<br>
If a minimum of a cost function is found for a constrained structure model in direct space, but the unconstrained refinement is impossible, one does not have criteria (e.g. distances, angles, their e.s.u. etc.) to assert that the structure is determined or soled. For such cases a special term should be proposed instead of structure solution, say, structure optimization. <br>
<br>
*******************************************************<br>
 Leonid A. Solovyov<br>
 Institute of Chemistry and Chemical Technology<br>
 660049, K. Marx 42, Krasnoyarsk, Russia<br>
 <a href="http://sites.google.com/site/solovyovleonid";>http://sites.google.com/site/solovyovleonid</a><br>
*******************************************************<br>
<br>
--- In <a href="mailto:sdpd%40yahoogroups.com";>sdpd...@yahoogroups.com</a>, Armel Le Bail &lt;armel.le_bail...@...&gt; wrote:<br>
&gt;<br>
&gt; <br>
&gt; <br>
&gt; &gt; &gt;People are inclined to see what they want to see. Restraints <br>
&gt; &gt; obscure the accuracy and validity of the refined parameters.<br>
&gt; &gt;<br>
&gt; &gt;It is a double-edge sword:-) I got it.<br>
&gt; <br>
&gt; To be a powder diffractionist is more and more difficult, especially when<br>
&gt; the data/parameters ratio (d/p) becomes small. With d/p &gt;20, this is<br>
&gt; generally comfortable though not ensuring always to locate so well the<br>
&gt; light atoms. With d/p &lt; 3 this is dramatic. And between 3 and 20 this is<br>
&gt; very frequently problematic ;-). We face such problems because of<br>
&gt; the high performance of structure solution in direct space : we can solve<br>
&gt; structures much more complex than those we can refine without<br>
&gt; restraints. Approximate limits were proposed :<br>
&gt; <a href="http://www.cristal.org/iniref/aca97/t18.gif";>http://www.cristal.org/iniref/aca97/t18.gif</a><br>
&gt; <a href="http://www.cristal.org/iniref/aca97/aca97.html";>http://www.cristal.org/iniref/aca97/aca97.html</a><br>
&gt; <br>
&gt; If referees admitted arguments like &quot;well, interatomic distances and<br>
&gt; angles look out of expected values, but this is powder diffraction you know,&quot;<br>
&gt; then you would not have to use restraints, constraints, rigid body, if not<br>
&gt; quantum chemical optimization. But they do not admit the argument.<br>
&gt; If you wish, you may give the results with and without the restraints (etc),<br>
&gt; so that everybody is happy (well, sometimes, without restraints it may go<br>
&gt; completely crazy...). After all, many journals propose the storage<br>
&gt; for supplementary material.<br>
&gt; <br>
&gt; Best,<br>
&gt; <br>
&gt; Armel<br>
&gt; <br>
&gt; PS -<br>
&gt; d = number of reflections reduced by some overlaping weight depending<br>
&gt;        on the FWHM<br>
&gt; p = number of independent atomic coordinates<br>
&gt;<br>
<br>
</p>

    </div>
     

    <!--~-|**|PrettyHtmlStart|**|-~-->
    <div style="color: #fff; height: 0;">__._,_.___</div>

        
  
   
    <div id="ygrp-actbar" style="clear: both; margin-bottom: 10px; white-space: nowrap; color: #666; padding-top: 15px;">
      <div>
        <a href="mailto:l_solovyov...@yahoo.com?subject=Re%3A%20Restraints%20and%20so%20on"; style="margin-right: 0; padding-right: 0;">
	  Reply to <span style="font-weight: 700;">sender</span></a> |
        <a href="mailto:sdpd...@yahoogroups.com?subject=Re%3A%20Restraints%20and%20so%20on";>
	  Reply to <span style="font-weight: 700;">group</span></a> |
        	  <a href="http://groups.yahoo.com/group/sdpd/post;_ylc=X3oDMTJwbnI3OGEyBF9TAzk3MzU5NzE0BGdycElkAzEwNTI1NDgEZ3Jwc3BJZAMxNzA1MDgzNDEyBG1zZ0lkAzI3MjQEc2VjA2Z0cgRzbGsDcnBseQRzdGltZQMxMzE1OTcyODg2?act=reply&messageNum=2724";>Reply <span style="font-weight: 700;">via web post</span></a> |
            	<a href="http://groups.yahoo.com/group/sdpd/post;_ylc=X3oDMTJlazRtbWtvBF9TAzk3MzU5NzE0BGdycElkAzEwNTI1NDgEZ3Jwc3BJZAMxNzA1MDgzNDEyBHNlYwNmdHIEc2xrA250cGMEc3RpbWUDMTMxNTk3Mjg4Ng--"; style="font-weight: 700;">Start a New Topic</a>
      </div>

                <a href="http://groups.yahoo.com/group/sdpd/message/2716;_ylc=X3oDMTM0bWFzZ3E1BF9TAzk3MzU5NzE0BGdycElkAzEwNTI1NDgEZ3Jwc3BJZAMxNzA1MDgzNDEyBG1zZ0lkAzI3MjQEc2VjA2Z0cgRzbGsDdnRwYwRzdGltZQMxMzE1OTcyODg2BHRwY0lkAzI3MTY-";>Messages in this topic</a>
          (<span style="font-weight: 700;">9</span>)
          </div> 
<!------- Start Nav Bar ------>
<!-- |**|begin egp html banner|**| -->
<!-- |**|end egp html banner|**| -->

<!-- |**|begin egp html banner|**| -->
<div id="ygrp-vital" style="background-color: #e0ecee; font-family: Verdana; font-size: 10px; margin-bottom: 10px; padding: 10px;">
      <span id="vithd" style="font-weight: bold; color: #333; text-transform: uppercase; ">Recent Activity:</span>

    <ul style="list-style-type: none; margin: 0; padding: 0; display: inline;">
            <li style="border-right: 1px solid #000; font-weight: 700; display: inline; padding: 0 5px; margin-left: 0;">
      <span class="cat"><a href="http://groups.yahoo.com/group/sdpd/members;_ylc=X3oDMTJmN29qanI1BF9TAzk3MzU5NzE0BGdycElkAzEwNTI1NDgEZ3Jwc3BJZAMxNzA1MDgzNDEyBHNlYwN2dGwEc2xrA3ZtYnJzBHN0aW1lAzEzMTU5NzI4ODY-?o=6"; style="text-decoration: none;">New Members</a></span>
      <span class="ct" style="color: #ff7900;">1</span>
    </li>
                                              </ul>
    
  <div style="clear: both; padding-top: 2px; color: #1e66ae;">
    <a href="http://groups.yahoo.com/group/sdpd;_ylc=X3oDMTJlOWphc3NyBF9TAzk3MzU5NzE0BGdycElkAzEwNTI1NDgEZ3Jwc3BJZAMxNzA1MDgzNDEyBHNlYwN2dGwEc2xrA3ZnaHAEc3RpbWUDMTMxNTk3Mjg4Ng--"; style="text-decoration: none;">Visit Your Group</a>
  </div>
</div>

              <div id="ygrp-mkp" style="border: 1px solid #d8d8d8; clear: both; float: left; font-family: Arial; margin: 5px 0 10px 0; padding: 0 10px;">
      <div id="hd" style="color: #628c2a; font-size: 85%; font-weight: 700; line-height: 122%; margin: 10px 0;">MARKETPLACE</div>
      <div id="ads" style="margin-bottom: 10px;">
                  <div class="ad" style="color: #628C2A; font-family: Arial; font-weight: 700; padding: 0 0;">
            <a href="http://global.ard.yahoo.com/SIG=15ogfs0o7/M=791726.14854538.14596965.10835568/D=groups/S=1705083412:MKP1/Y=YAHOO/EXP=1315980086/L=37efada2-de86-11e0-9984-5754c25a96bf/B=L7fsLNBDRvE-/J=1315972886725576/K=B6aAWiljMzhINxpcaPLsMA/A=6449876/R=0/SIG=130kfcsn4/*http://www.freecreditscore.com/dni/default.aspx?SiteVersionID=997&sc=671020&bcd=YGROUPS_Bad598";>A bad score is 598. A bad idea is not checking yours, at freecreditscore.com.</a><script language=javascript>
if(window.yzq_d==null)window.yzq_d=new Object();
window.yzq_d['L7fsLNBDRvE-']='&U=13c5elg0i%2fN%3dL7fsLNBDRvE-%2fC%3d791726.14854538.14596965.10835568%2fD%3dMKP1%2fB%3d6449876%2fV%3d1';
</script><noscript><img width=1 height=1 alt="" src="http://us.bc.yahoo.com/b?P=37efada2-de86-11e0-9984-5754c25a96bf&T=1dhskq6bd%2fX%3d1315972886%2fE%3d1705083412%2fR%3dgroups%2fK%3d5%2fV%3d2.1%2fW%3dH%2fY%3dYAHOO%2fF%3d2843176041%2fH%3dY29udGVudD0iUG9kY2FzdHM7R3JvdXBzO0ZsaWNrcjtHZW9jaXRpZXM7TWVzc2FnZV9Cb2FyZHM7S25vd2xlZGdlX1NlYXJjaDtCcmllZmNhc2U7QXV0b3MtQ3VzdG9tO0ZpbmFuY2U7Qm9va21hcms7IiBkaXNhYmxlc2h1ZmZsaW5nPSIxIiBzZXJ2ZUlkPSIzN2VmYWRhMi1kZTg2LTExZTAtOTk4NC01NzU0YzI1YTk2YmYiIHNpdGVJZD0iNDQ1MjU1MSIgdFN0bXA9IjEzMTU5NzI4ODY2NTU3NTUiIA--%2fQ%3d-1%2fS%3d1%2fJ%3d673E8962&U=13c5elg0i%2fN%3dL7fsLNBDRvE-%2fC%3d791726.14854538.14596965.10835568%2fD%3dMKP1%2fB%3d6449876%2fV%3d1";></noscript><!--QYZ ,;;MKP1;1705083412;6;-->          </div>
                                  <div class="ad" style="color: #628C2A; font-family: Arial; font-weight: 700; padding: 0 0;">
                          <hr style="border: 1px solid #d8d8d8;">
                        <p><a href="http://global.ard.yahoo.com/SIG=15om0bn9t/M=493064.14543979.14562481.13298430/D=groups/S=1705083412:MKP1/Y=YAHOO/EXP=1315980086/L=37efada2-de86-11e0-9984-5754c25a96bf/B=MLfsLNBDRvE-/J=1315972886725576/K=B6aAWiljMzhINxpcaPLsMA/A=6060255/R=0/SIG=1194m4keh/*http://us.toolbar.yahoo.com/?.cpdl=grpj";>Stay on top of your group activity without leaving the page you're on - Get the Yahoo! Toolbar now.</a></p> <script language=javascript>
if(window.yzq_d==null)window.yzq_d=new Object();
window.yzq_d['MLfsLNBDRvE-']='&U=13cvc06p9%2fN%3dMLfsLNBDRvE-%2fC%3d493064.14543979.14562481.13298430%2fD%3dMKP1%2fB%3d6060255%2fV%3d1';
</script><noscript><img width=1 height=1 alt="" src="http://us.bc.yahoo.com/b?P=37efada2-de86-11e0-9984-5754c25a96bf&T=1dh8d6n0b%2fX%3d1315972886%2fE%3d1705083412%2fR%3dgroups%2fK%3d5%2fV%3d2.1%2fW%3dH%2fY%3dYAHOO%2fF%3d1797653174%2fH%3dY29udGVudD0iUG9kY2FzdHM7R3JvdXBzO0ZsaWNrcjtHZW9jaXRpZXM7TWVzc2FnZV9Cb2FyZHM7S25vd2xlZGdlX1NlYXJjaDtCcmllZmNhc2U7QXV0b3MtQ3VzdG9tO0ZpbmFuY2U7Qm9va21hcms7IiBkaXNhYmxlc2h1ZmZsaW5nPSIxIiBzZXJ2ZUlkPSIzN2VmYWRhMi1kZTg2LTExZTAtOTk4NC01NzU0YzI1YTk2YmYiIHNpdGVJZD0iNDQ1MjU1MSIgdFN0bXA9IjEzMTU5NzI4ODY2NTU3NTUiIA--%2fQ%3d-1%2fS%3d1%2fJ%3d673E8962&U=13cvc06p9%2fN%3dMLfsLNBDRvE-%2fC%3d493064.14543979.14562481.13298430%2fD%3dMKP1%2fB%3d6060255%2fV%3d1";></noscript><!--QYZ ,;;MKP1;1705083412;2;-->          </div>
              </div>
    </div>
  
<div id="ft" style="font-family: Arial; font-size: 11px; margin-top: 5px; padding: 0 2px 0 0; clear: both;">
  <a href="http://groups.yahoo.com/;_ylc=X3oDMTJkbzZic25zBF9TAzk3MzU5NzE0BGdycElkAzEwNTI1NDgEZ3Jwc3BJZAMxNzA1MDgzNDEyBHNlYwNmdHIEc2xrA2dmcARzdGltZQMxMzE1OTcyODg2"; style="float: left;"><img src="http://l.yimg.com/a/i/us/yg/logo/us.gif"; height="15" width="137" alt="Yahoo! Groups" style="border: 0;"/></a>
  <div style="color: #747575; float: right;">Switch to: <a href="mailto:sdpd-traditional...@yahoogroups.com?subject=Change Delivery Format: Traditional" style="text-decoration: none;">Text-Only</a>, <a href="mailto:sdpd-digest...@yahoogroups.com?subject=Email Delivery: Digest" class="margin-rt" style="text-decoration: none;">Daily Digest</a> &bull; <a href="mailto:sdpd-unsubscribe...@yahoogroups.com?subject=Unsubscribe"; style="text-decoration: none;">Unsubscribe</a> &bull; <a href="http://docs.yahoo.com/info/terms/"; style="text-decoration: none;">Terms of Use</a></div>
</div>

<!-- |**|end egp html banner|**| -->

  </div> <!-- ygrp-msg -->

  <!-- Sponsor -->
  <!-- |**|begin egp html banner|**| -->
  <div id="ygrp-sponsor" style="width:160px; float:right; clear:none; margin:0 0 25px 0; background: #fff;">

<!-- Start Recommendations -->
<div id="ygrp-reco">
     </div>
<!-- End Recommendations -->



  </div>   <!-- |**|end egp html banner|**| -->

  <div style="clear:both; color: #FFF; font-size:1px;">.</div>
</div>

  <img src="http://geo.yahoo.com/serv?s=97359714/grpId=1052548/grpspId=1705083412/msgId=2724/stime=1315972886/nc1=5191953/nc2=5741392/nc3=4507179"; width="1" height="1"> <br>

<div style="color: #fff; height: 0;">__,_._,___</div>
<!--~-|**|PrettyHtmlEnd|**|-~-->

</body>

<!--~-|**|PrettyHtmlStart|**|-~-->
<head>
  <style type="text/css">
  <!--
  #ygrp-mkp {
  border: 1px solid #d8d8d8;
  font-family: Arial;
  margin: 10px 0;
  padding: 0 10px;
}

#ygrp-mkp hr {
  border: 1px solid #d8d8d8;
}

#ygrp-mkp #hd {
  color: #628c2a;
  font-size: 85%;
  font-weight: 700;
  line-height: 122%;
  margin: 10px 0;
}

#ygrp-mkp #ads {
  margin-bottom: 10px;
}

#ygrp-mkp .ad {
  padding: 0 0;
}

#ygrp-mkp .ad p {
  margin: 0;
}

#ygrp-mkp .ad a {
  color: #0000ff;
  text-decoration: none;
}
  #ygrp-sponsor #ygrp-lc {
  font-family: Arial;
}

#ygrp-sponsor #ygrp-lc #hd {
  margin: 10px 0px;
  font-weight: 700;
  font-size: 78%;
  line-height: 122%;
}

#ygrp-sponsor #ygrp-lc .ad {
  margin-bottom: 10px;
  padding: 0 0;
}

  a {
    color: #1e66ae;
  }

  #actions {
    font-family: Verdana;
    font-size: 11px;
    padding: 10px 0;
  }

  #activity {
    background-color: #e0ecee;
    float: left;
    font-family: Verdana;
    font-size: 10px;
    padding: 10px;
  }

  #activity span {
    font-weight: 700;
  }

  #activity span:first-child {
    text-transform: uppercase;
  }

  #activity span a {
    color: #5085b6;
    text-decoration: none;
  }

  #activity span span {
    color: #ff7900;
  }

  #activity span .underline {
    text-decoration: underline;
  }

  .attach {
    clear: both;
    display: table;
    font-family: Arial;
    font-size: 12px;
    padding: 10px 0;
    width: 400px;
  }

  .attach div a {
    text-decoration: none;
  }

  .attach img {
    border: none;
    padding-right: 5px;
  }

  .attach label {
    display: block;
    margin-bottom: 5px;
  }

  .attach label a {
    text-decoration: none;
  }
  
  blockquote {
    margin: 0 0 0 4px;
  }

  .bold {
    font-family: Arial;
    font-size: 13px;
    font-weight: 700;
  }

  .bold a {
    text-decoration: none;
  }

  dd.last p a {
    font-family: Verdana;
    font-weight: 700;
  }

  dd.last p span {
    margin-right: 10px;
    font-family: Verdana;
    font-weight: 700;
  }

  dd.last p span.yshortcuts {
    margin-right: 0;
  }

  div.attach-table div div a {
    text-decoration: none;
  }

  div.attach-table {
    width: 400px;
  }

  div.file-title a, div.file-title a:active, div.file-title a:hover, div.file-title a:visited {
    text-decoration: none;
  }

  div.photo-title a, div.photo-title a:active, div.photo-title a:hover, div.photo-title a:visited {
    text-decoration: none;
  }

  div#ygrp-mlmsg #ygrp-msg p a span.yshortcuts {
    font-family: Verdana;
    font-size: 10px;
    font-weight: normal;
  }

  .green {
    color: #628c2a;
  }

  .MsoNormal {
    margin: 0 0 0 0;
  }

  o {
    font-size: 0;
  }

  #photos div {
    float: left;
    width: 72px;
  }

  #photos div div {
    border: 1px solid #666666;
    height: 62px;
    overflow: hidden;
    width: 62px;
  }

  #photos div label {
    color: #666666;
    font-size: 10px;
    overflow: hidden;
    text-align: center;
    white-space: nowrap;
    width: 64px;
  }

  #reco-category {
    font-size: 77%;
  }

  #reco-desc {
    font-size: 77%;
  }

  .replbq {
    margin: 4px;
  }

  #ygrp-actbar div a:first-child {
   /* border-right: 0px solid #000;*/
    margin-right: 2px;
    padding-right: 5px;
  }

  #ygrp-mlmsg {
    font-size: 13px;
    font-family: Arial, helvetica,clean, sans-serif;
    *font-size: small;
    *font: x-small;
  }

  #ygrp-mlmsg table {
    font-size: inherit;
    font: 100%;
  }

  #ygrp-mlmsg select, input, textarea {
    font: 99% Arial, Helvetica, clean, sans-serif;
  }

  #ygrp-mlmsg pre, code {
    font:115% monospace;
    *font-size:100%;
  }

  #ygrp-mlmsg * {
    line-height: 1.22em;
  }

  #ygrp-mlmsg #logo {
    padding-bottom: 10px;
  }

  #ygrp-mlmsg a {
    color: #1E66AE;
  }

  #ygrp-msg p a {
    font-family: Verdana;
  }

  #ygrp-msg p#attach-count span {
    color: #1E66AE;
    font-weight: 700;
  }

  #ygrp-reco #reco-head {
    color: #ff7900;
    font-weight: 700;
  }

  #ygrp-reco {
    margin-bottom: 20px;
    padding: 0px;
  }

  #ygrp-sponsor #ov li a {
    font-size: 130%;
    text-decoration: none;
  }

  #ygrp-sponsor #ov li {
    font-size: 77%;
    list-style-type: square;
    padding: 6px 0;
  } 

  #ygrp-sponsor #ov ul {
    margin: 0;
    padding: 0 0 0 8px;
  }

  #ygrp-text {
    font-family: Georgia;
  }

  #ygrp-text p {
    margin: 0 0 1em 0;
  }

  #ygrp-text tt {
    font-size: 120%;
  }

  #ygrp-vital ul li:last-child {
    border-right: none !important; 
  } 
  -->
  </style>
</head>

<!--~-|**|PrettyHtmlEnd|**|-~-->
</html>
<!-- end group email -->


</x-html>